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affineTransform

By Robert Haase based on work by Martin Weigert

Applies an affine transform to a 3D image. Individual transforms must be separated by spaces.

Supported transforms:

Example transform: transform = “center scale=2 rotate=45 -center”;

Usage in ImageJ macro

Ext.CLIJ2_affineTransform(Image source, Image destination, String transform);

Example notebooks

applyVectorFieldMD
rotate_comparison_IJ_CLIJ

Example scripts

affineTransform.ijm
affineTransform3D.ijm
applyVectorField.ijm
applyVectorFieldMD.ijm
motionCorrection.ijm
motionCorrection_compare_stackreg.ijm
rotate_comparison_IJ_CLIJ.ijm
affineTransform.py
applyVectorField.py
interactiveCylinderProjection.py
interactiveSphereProjection.py
rotateFree.py
rotateOverwriteOiginal.py

License terms

adapted from: https://github.com/maweigert/gputools/blob/master/gputools/transforms/kernels/transformations.cl

Copyright (c) 2016, Martin Weigert
All rights reserved.

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS “AS IS”
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

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