concatenateStacks

Concatenates two stacks in Z.

Availability: Available in Fiji by activating the update sites clij and clij2. This function is part of clij2_-2.5.0.1.jar.

Usage in ImageJ macro

Ext.CLIJ2_concatenateStacks(Image stack1, Image stack2, Image destination);

Usage in object oriented programming languages

Java

// init CLIJ and GPU
import net.haesleinhuepf.clij2.CLIJ2;
import net.haesleinhuepf.clij.clearcl.ClearCLBuffer;
CLIJ2 clij2 = CLIJ2.getInstance();

// get input parameters
ClearCLBuffer stack1 = clij2.push(stack1ImagePlus);
ClearCLBuffer stack2 = clij2.push(stack2ImagePlus);
destination = clij2.create(stack1);

// Execute operation on GPU
clij2.concatenateStacks(stack1, stack2, destination);

// show result
destinationImagePlus = clij2.pull(destination);
destinationImagePlus.show();

// cleanup memory on GPU
clij2.release(stack1);
clij2.release(stack2);
clij2.release(destination);

Matlab

% init CLIJ and GPU
clij2 = init_clatlab();

% get input parameters
stack1 = clij2.pushMat(stack1_matrix);
stack2 = clij2.pushMat(stack2_matrix);
destination = clij2.create(stack1);

% Execute operation on GPU
clij2.concatenateStacks(stack1, stack2, destination);

% show result
destination = clij2.pullMat(destination)

% cleanup memory on GPU
clij2.release(stack1);
clij2.release(stack2);
clij2.release(destination);

Icy JavaScript

// init CLIJ and GPU
importClass(net.haesleinhuepf.clicy.CLICY);
importClass(Packages.icy.main.Icy);

clij2 = CLICY.getInstance();

// get input parameters
stack1_sequence = getSequence();
stack1 = clij2.pushSequence(stack1_sequence);
stack2_sequence = getSequence();
stack2 = clij2.pushSequence(stack2_sequence);
destination = clij2.create(stack1);

// Execute operation on GPU
clij2.concatenateStacks(stack1, stack2, destination);

// show result
destination_sequence = clij2.pullSequence(destination)
Icy.addSequence(destination_sequence);
// cleanup memory on GPU
clij2.release(stack1);
clij2.release(stack2);
clij2.release(destination);

clEsperanto Python (experimental)

import pyclesperanto_prototype as cle

cle.concatenate_stacks(stack1, stack2, destination)

Back to CLIJ2 reference Back to CLIJ2 documentation

Imprint