copy

Copies an image.

f(x) = x

Category: Transformations

Availability: Available in Fiji by activating the update sites clij and clij2. This function is part of clij2_-2.5.0.1.jar.

copy often follows after

drawBox (1)

Usage in ImageJ macro

Ext.CLIJ2_copy(Image source, Image destination);

Usage in object oriented programming languages

Java

// init CLIJ and GPU
import net.haesleinhuepf.clij2.CLIJ2;
import net.haesleinhuepf.clij.clearcl.ClearCLBuffer;
CLIJ2 clij2 = CLIJ2.getInstance();

// get input parameters
ClearCLBuffer source = clij2.push(sourceImagePlus);
destination = clij2.create(source);

// Execute operation on GPU
clij2.copy(source, destination);

// show result
destinationImagePlus = clij2.pull(destination);
destinationImagePlus.show();

// cleanup memory on GPU
clij2.release(source);
clij2.release(destination);

Matlab

% init CLIJ and GPU
clij2 = init_clatlab();

% get input parameters
source = clij2.pushMat(source_matrix);
destination = clij2.create(source);

% Execute operation on GPU
clij2.copy(source, destination);

% show result
destination = clij2.pullMat(destination)

% cleanup memory on GPU
clij2.release(source);
clij2.release(destination);

Icy JavaScript

// init CLIJ and GPU
importClass(net.haesleinhuepf.clicy.CLICY);
importClass(Packages.icy.main.Icy);

clij2 = CLICY.getInstance();

// get input parameters
source_sequence = getSequence();
source = clij2.pushSequence(source_sequence);
destination = clij2.create(source);

// Execute operation on GPU
clij2.copy(source, destination);

// show result
destination_sequence = clij2.pullSequence(destination)
Icy.addSequence(destination_sequence);
// cleanup memory on GPU
clij2.release(source);
clij2.release(destination);

clEsperanto Python (experimental)

import pyclesperanto_prototype as cle

cle.copy(source, destination)

Example notebooks

basic_image_processing
count_overlap_between_channels
tribolium_morphometry
inspecting_3d_images.ipynb
napari_dask.ipynb
Segmentation_3D.ipynb
voronoi_otsu_labeling.ipynb
tribolium_morphometry.ipynb
benchmarking_centroids_of_labels.ipynb
statistics_of_labeled_pixels.ipynb

Example scripts

allocateBigImages.ijm
applyVectorField.ijm
basic_image_processing.ijm
count_overlap_between_channels.ijm
division_visualisation.ijm
memory_reuse_versus_reallocation.ijm
motionCorrection.ijm
motionCorrection_compare_stackreg.ijm
process_5D_stack.ijm
rotateFree.ijm
rotateOverwriteOriginal.ijm
rotating_sphere.ijm
scaleFree.ijm
translate.ijm
tribolium_morphometry.ijm
tubeness.ijm
applyVectorField.py
interactiveCylinderProjection.py
interactiveSphereProjection.py
rotateFree.py
rotateOverwriteOiginal.py
tribolium.py

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