CLIJ2

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drawMeshBetweenProximalLabels

Starting from a label map, draw lines between labels that are closer than a given distance resulting in a mesh.

The end points of the lines correspond to the centroids of the labels.

Categories: Graphs, Labels, Measurements

Usage in ImageJ macro

Ext.CLIJx_drawMeshBetweenProximalLabels(Image input, Image destination, Number maximum_distance);

Usage in object oriented programming languages

Java
// init CLIJ and GPU
import net.haesleinhuepf.clijx.CLIJx;
import net.haesleinhuepf.clij.clearcl.ClearCLBuffer;
CLIJx clijx = CLIJx.getInstance();

// get input parameters
ClearCLBuffer input = clijx.push(inputImagePlus);
destination = clijx.create(input);
float maximum_distance = 1.0;
// Execute operation on GPU
clijx.drawMeshBetweenProximalLabels(input, destination, maximum_distance);
// show result
destinationImagePlus = clijx.pull(destination);
destinationImagePlus.show();

// cleanup memory on GPU
clijx.release(input);
clijx.release(destination);
Matlab
% init CLIJ and GPU
clijx = init_clatlabx();

% get input parameters
input = clijx.pushMat(input_matrix);
destination = clijx.create(input);
maximum_distance = 1.0;
% Execute operation on GPU
clijx.drawMeshBetweenProximalLabels(input, destination, maximum_distance);
% show result
destination = clijx.pullMat(destination)

% cleanup memory on GPU
clijx.release(input);
clijx.release(destination);
clEsperanto Python (experimental)
import pyclesperanto_prototype as cle

cle.draw_mesh_between_proximal_labels(input, destination, maximum_distance)

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