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Trains a Weka model using functionality of Fijis Trainable Weka Segmentation plugin.

It takes a 3D feature stack (e.g. first plane original image, second plane blurred, third plane edge image)and trains a Weka model. This model will be saved to disc. The given groundTruth image is supposed to be a label map where pixels with value 1 represent class 1, pixels with value 2 represent class 2 and so on. Pixels with value 0 will be ignored for training.

Default values for options are:

Categories: Segmentation, Machine Learning

Usage in ImageJ macro

Ext.CLIJx_trainWekaModelWithOptions(Image featureStack3D, Image groundTruth2D, String saveModelFilename, Number trees, Number features, Number maxDepth);

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