clupath

clupath is a bridge between QuPath and clij.

Right now, this is very preliminary.

Installation

Download and install QuPath version 0.2.3. In order to make CLUPATH run in QuPath, download the following jar file and drag&drop it on QuPath. QuPath will take care of it and install it in the right folder.

• clupath-0.5.1.4-jar-with-dependencies.jar

If you retrieve an error message such as “….jar file cannot be copied”, navigate to the QuPath\extensions folder in your home directory, e.g. C:\Users<username>\QuPath\extensions and delete other versions of clupath…jar.

Examples

Example code for QuPaths script editor can be found in the groovy directory.

Please note

It is recommended to use clij from Fiji. QuPath support is experimental.

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