Exporting workflows as ImageJ Macro

After you finished designing your image analysis workflow, you can export an ImageJ script and apply it to image sequences systematically.

Several languages are supported. Furthermore, you can export a script in multiple languages and compare:


Download video [Image data source: Daniela Vorkel, Myers lab, CSBD / MPI CBG]

Exporting as ImageJ Macro Markdown notebook

If you want to export your workflow as ImageJ Macro Markdown notebook, please follow the installation instructions

Download video

Please note: While CLIJx-Assistant is running, the GPU may be busy and full of images. Thus, before running your generated macro, close all CLIJx-Assistant windows.

Back to CLIJx-Assistant