binaryNot

Computes a binary image (containing pixel values 0 and 1) from an image X by negating its pixel values x using the binary NOT operator !

All pixel values except 0 in the input image are interpreted as 1.

f(x) = !x

Parameters

source : Image The binary input image to be inverted. destination : Image The output image where results are written into.

Categories: Filter, Math, Binary

Availability: Available in Fiji by activating the update sites clij and clij2. This function is part of clij2_-2.5.0.1.jar.

binaryNot often follows after

binaryNot is often followed by

Usage in ImageJ macro

Ext.CLIJ2_binaryNot(Image source, Image destination);

Usage in object oriented programming languages

Java

// init CLIJ and GPU
import net.haesleinhuepf.clij2.CLIJ2;
import net.haesleinhuepf.clij.clearcl.ClearCLBuffer;
CLIJ2 clij2 = CLIJ2.getInstance();

// get input parameters
ClearCLBuffer source = clij2.push(sourceImagePlus);
destination = clij2.create(source);

// Execute operation on GPU
clij2.binaryNot(source, destination);

// show result
destinationImagePlus = clij2.pull(destination);
destinationImagePlus.show();

// cleanup memory on GPU
clij2.release(source);
clij2.release(destination);

Matlab

% init CLIJ and GPU
clij2 = init_clatlab();

% get input parameters
source = clij2.pushMat(source_matrix);
destination = clij2.create(source);

% Execute operation on GPU
clij2.binaryNot(source, destination);

% show result
destination = clij2.pullMat(destination)

% cleanup memory on GPU
clij2.release(source);
clij2.release(destination);

Icy JavaScript

// init CLIJ and GPU
importClass(net.haesleinhuepf.clicy.CLICY);
importClass(Packages.icy.main.Icy);

clij2 = CLICY.getInstance();

// get input parameters
source_sequence = getSequence();
source = clij2.pushSequence(source_sequence);
destination = clij2.create(source);

// Execute operation on GPU
clij2.binaryNot(source, destination);

// show result
destination_sequence = clij2.pullSequence(destination)
Icy.addSequence(destination_sequence);
// cleanup memory on GPU
clij2.release(source);
clij2.release(destination);

clEsperanto Python (experimental)

import pyclesperanto_prototype as cle

cle.binary_not(source, destination)

Example notebooks

mean_of_touching_neighbors
quantitative_neighbor_maps.ipynb
segmentation_2d_membranes.ipynb

Example scripts

distance_map.ijm
division_visualisation.ijm
mean_of_touching_neighbors.ijm
mesh_close_points.m

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