meanZProjectionBounded

Determines the mean average intensity projection of an image along Z within a given z range.

Availability: Available in Fiji by activating the update sites clij and clij2. This function is part of clij2_-2.5.0.1.jar.

Usage in ImageJ macro

Ext.CLIJ2_meanZProjectionBounded(Image source, Image destination_mean, Number min_z, Number max_z);

Usage in object oriented programming languages

Java

// init CLIJ and GPU
import net.haesleinhuepf.clij2.CLIJ2;
import net.haesleinhuepf.clij.clearcl.ClearCLBuffer;
CLIJ2 clij2 = CLIJ2.getInstance();

// get input parameters
ClearCLBuffer source = clij2.push(sourceImagePlus);
destination_mean = clij2.create(source);
int min_z = 10;
int max_z = 20;

// Execute operation on GPU
clij2.meanZProjectionBounded(source, destination_mean, min_z, max_z);

// show result
destination_meanImagePlus = clij2.pull(destination_mean);
destination_meanImagePlus.show();

// cleanup memory on GPU
clij2.release(source);
clij2.release(destination_mean);

Matlab

% init CLIJ and GPU
clij2 = init_clatlab();

% get input parameters
source = clij2.pushMat(source_matrix);
destination_mean = clij2.create(source);
min_z = 10;
max_z = 20;

% Execute operation on GPU
clij2.meanZProjectionBounded(source, destination_mean, min_z, max_z);

% show result
destination_mean = clij2.pullMat(destination_mean)

% cleanup memory on GPU
clij2.release(source);
clij2.release(destination_mean);

Icy JavaScript

// init CLIJ and GPU
importClass(net.haesleinhuepf.clicy.CLICY);
importClass(Packages.icy.main.Icy);

clij2 = CLICY.getInstance();

// get input parameters
source_sequence = getSequence();
source = clij2.pushSequence(source_sequence);
destination_mean = clij2.create(source);
min_z = 10;
max_z = 20;

// Execute operation on GPU
clij2.meanZProjectionBounded(source, destination_mean, min_z, max_z);

// show result
destination_mean_sequence = clij2.pullSequence(destination_mean)
Icy.addSequence(destination_mean_sequence);
// cleanup memory on GPU
clij2.release(source);
clij2.release(destination_mean);

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