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CLIJ 1/2/x reference in category ‘project’

This reference contains all methods currently available in CLIJ, CLIJ2 and CLIJx for projecting images.. Read more about CLIJs release cycle

Please note: CLIJ is deprecated. Make the transition to CLIJ2.

Method is available in CLIJ (deprecated release)
Method is available in CLIJ2 (stable release)
Method is available in CLIJx (experimental release)
Method is available in clEsperanto (experimental)

Categories: Binary, Filter, Graphs, Labels, Math, Matrices, Measurements, Projections, Transformations, Detection

[A], B, C,[D],[E], F, G, H, I, J, K, L,[M], N, O, P, Q,[R],[S], T, U, V, W, X, Y,[Z]

A

argMaximumZProjection

Determines the maximum projection of an image stack along Z.

D

depthColorProjection

Determines a maximum projection of an image stack and does a color coding of the determined arg Z (position of the found maximum).

E

extendedDepthOfFocusTenengradProjection (Experimental)

Extended depth of focus projection maximizing intensity in the local sobel image.

extendedDepthOfFocusVarianceProjection (Experimental)

Extended depth of focus projection maximizing local pixel intensity variance.

M

maximumXProjection

Determines the maximum intensity projection of an image along X.

maximumYProjection

Determines the maximum intensity projection of an image along X.

maximumZProjection

Determines the maximum intensity projection of an image along Z.

maximumZProjectionBounded

Determines the maximum intensity projection of an image along Z within a given z range.

meanXProjection

Determines the mean average intensity projection of an image along X.

meanYProjection

Determines the mean average intensity projection of an image along Y.

meanZProjection

Determines the mean average intensity projection of an image along Z.

meanZProjectionAboveThreshold (Experimental)

Determines the mean average intensity projection of an image along Z but only for pixels above a given threshold.

meanZProjectionBelowThreshold (Experimental)

Determines the mean average intensity projection of an image along Z but only for pixels below a given threshold.

meanZProjectionBounded

Determines the mean average intensity projection of an image along Z within a given z range.

medianZProjection

Determines the median intensity projection of an image stack along Z.

minimumXProjection

Determines the minimum intensity projection of an image along Y.

minimumYProjection

Determines the minimum intensity projection of an image along Y.

minimumZProjection

Determines the minimum intensity projection of an image along Z.

minimumZProjectionBounded

Determines the minimum intensity projection of an image along Z within a given z range.

minimumZProjectionThresholdedBounded

Determines the minimum intensity projection of all pixels in an image above a given threshold along Z within a given z range.

R

resliceRadial

Computes a radial projection of an image stack.

resliceRadialTop

Computes a radial projection of an image stack and reslices it from top.

S

standardDeviationZProjection

Determines the standard deviation intensity projection of an image stack along Z.

sumXProjection

Determines the sum intensity projection of an image along Z.

sumYProjection

Determines the sum intensity projection of an image along Z.

sumZProjection

Determines the sum intensity projection of an image along Z.

Z

zPositionOfMaximumZProjection (Experimental)

Determines a Z-position of the maximum intensity along Z and writes it into the resulting image.

zPositionProjection (Experimental)

Project a defined Z-slice of a 3D stack into a 2D image.

zPositionRangeProjection (Experimental)

Project multiple Z-slices of a 3D stack into a new 3D stack.

29 methods listed.