sumZProjection

Determines the sum intensity projection of an image along Z.

Availability: Available in Fiji by activating the update sites clij and clij2. This function is part of clij2_-2.5.0.1.jar.

Usage in ImageJ macro

Ext.CLIJ2_sumZProjection(Image source, Image destination_sum);

Usage in object oriented programming languages

Java

// init CLIJ and GPU
import net.haesleinhuepf.clij2.CLIJ2;
import net.haesleinhuepf.clij.clearcl.ClearCLBuffer;
CLIJ2 clij2 = CLIJ2.getInstance();

// get input parameters
ClearCLBuffer source = clij2.push(sourceImagePlus);
destination_sum = clij2.create(source);

// Execute operation on GPU
clij2.sumZProjection(source, destination_sum);

// show result
destination_sumImagePlus = clij2.pull(destination_sum);
destination_sumImagePlus.show();

// cleanup memory on GPU
clij2.release(source);
clij2.release(destination_sum);

Matlab

% init CLIJ and GPU
clij2 = init_clatlab();

% get input parameters
source = clij2.pushMat(source_matrix);
destination_sum = clij2.create(source);

% Execute operation on GPU
clij2.sumZProjection(source, destination_sum);

% show result
destination_sum = clij2.pullMat(destination_sum)

% cleanup memory on GPU
clij2.release(source);
clij2.release(destination_sum);

Icy JavaScript

// init CLIJ and GPU
importClass(net.haesleinhuepf.clicy.CLICY);
importClass(Packages.icy.main.Icy);

clij2 = CLICY.getInstance();

// get input parameters
source_sequence = getSequence();
source = clij2.pushSequence(source_sequence);
destination_sum = clij2.create(source);

// Execute operation on GPU
clij2.sumZProjection(source, destination_sum);

// show result
destination_sum_sequence = clij2.pullSequence(destination_sum)
Icy.addSequence(destination_sum_sequence);
// cleanup memory on GPU
clij2.release(source);
clij2.release(destination_sum);

clEsperanto Python (experimental)

import pyclesperanto_prototype as cle

cle.sum_z_projection(source, destination_sum)

Example notebooks

inspecting_3d_images.ipynb

Back to CLIJ2 reference Back to CLIJ2 documentation

Imprint