Right now, this is very preliminary.
Restart Fiji. You will need to specify an ImageJ location later in your pyimagej scripts. Specify the installation directory of Fiji.
conda create -n pyimagej pyimagej openjdk=8
conda activate pyimagej pip install scikit-image scipy numpy matplotlib gputools
If installation of gputools doesn't work because of issues with pyopencl for Windows, consider downloading a precompiled wheel (e.g. from [here](https://www.lfd.uci.edu/~gohlke/pythonlibs/#pyopencl) ) and installing it manually:
pip install pyopencl-2019.1.1+cl12-cp37-cp37m-win_amd64.whl pip install gputools
## Example code Examples are available in the [python](https://github.com/clij/clijpy/blob/master/python/) folder. After installation, you can call the examples like this: ```bash conda activate imagej python demo.py
Please note that you need to update the path to your Fiji installation in order to make the scripts run.
It is recommended to use clij from Fiji. Python support is under development.