saveAsTIF

Pulls an image from the GPU memory and saves it as TIF to disc.

Availability: Available in Fiji by activating the update sites clij and clij2. This function is part of clij2_-2.5.0.1.jar.

saveAsTIF often follows after

Usage in ImageJ macro

Ext.CLIJ2_saveAsTIF(Image input, String filename);

Usage in object oriented programming languages

Java

// init CLIJ and GPU
import net.haesleinhuepf.clij2.CLIJ2;
import net.haesleinhuepf.clij.clearcl.ClearCLBuffer;
CLIJ2 clij2 = CLIJ2.getInstance();

// get input parameters
ClearCLBuffer input = clij2.push(inputImagePlus);

// Execute operation on GPU
clij2.saveAsTIF(input, filename);

// show result

// cleanup memory on GPU
clij2.release(input);

Matlab

% init CLIJ and GPU
clij2 = init_clatlab();

% get input parameters
input = clij2.pushMat(input_matrix);

% Execute operation on GPU
clij2.saveAsTIF(input, filename);

% show result

% cleanup memory on GPU
clij2.release(input);

Icy JavaScript

// init CLIJ and GPU
importClass(net.haesleinhuepf.clicy.CLICY);
importClass(Packages.icy.main.Icy);

clij2 = CLICY.getInstance();

// get input parameters
input_sequence = getSequence();
input = clij2.pushSequence(input_sequence);

// Execute operation on GPU
clij2.saveAsTIF(input, filename);

// show result

// cleanup memory on GPU
clij2.release(input);

Example notebooks

process_multichannel_timelapse

Example scripts

process_multichannel_timelapse.ijm

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