maximumZProjection

Determines the maximum intensity projection of an image along Z.

Availability: Available in Fiji by activating the update sites clij and clij2. This function is part of clij2_-2.2.0.19.jar.

maximumZProjection often follows after

maximumZProjection is often followed by

Usage in ImageJ macro

Ext.CLIJ2_maximumZProjection(Image source, Image destination_max);

Usage in object oriented programming languages

Java

// init CLIJ and GPU
import net.haesleinhuepf.clij2.CLIJ2;
import net.haesleinhuepf.clij.clearcl.ClearCLBuffer;
CLIJ2 clij2 = CLIJ2.getInstance();

// get input parameters
ClearCLBuffer source = clij2.push(sourceImagePlus);
destination_max = clij2.create(new long[]{source.getWidth(), source.getHeight()}, source.getNativeType());

// Execute operation on GPU
clij2.maximumZProjection(source, destination_max);

// show result
destination_maxImagePlus = clij2.pull(destination_max);
destination_maxImagePlus.show();

// cleanup memory on GPU
clij2.release(source);
clij2.release(destination_max);

Matlab

% init CLIJ and GPU
clij2 = init_clatlab();

% get input parameters
source = clij2.pushMat(source_matrix);
destination_max = clij2.create([source.getWidth(), source.getHeight()], source.getNativeType());

% Execute operation on GPU
clij2.maximumZProjection(source, destination_max);

% show result
destination_max = clij2.pullMat(destination_max)

% cleanup memory on GPU
clij2.release(source);
clij2.release(destination_max);

Icy JavaScript

// init CLIJ and GPU
importClass(net.haesleinhuepf.clicy.CLICY);
importClass(Packages.icy.main.Icy);

clij2 = CLICY.getInstance();

// get input parameters
source_sequence = getSequence();
source = clij2.pushSequence(source_sequence);
destination_max = clij2.create([source.getWidth(), source.getHeight()], source.getNativeType());

// Execute operation on GPU
clij2.maximumZProjection(source, destination_max);

// show result
destination_max_sequence = clij2.pullSequence(destination_max)
Icy.addSequence(destination_max_sequence);
// cleanup memory on GPU
clij2.release(source);
clij2.release(destination_max);

clEsperanto Python (experimental)

import pyclesperanto_prototype as cle

cle.maximum_z_projection(source, destination_max)

Example notebooks

basic_image_processing
drosophila_max_cylinder_projection
image_segmentation_3d
maximumProjection
process_multichannel_timelapse
superpixel_segmentation
tribolium_morphometry
inspecting_3d_images.ipynb
Segmentation_3D.ipynb
tribolium_morphometry.ipynb
intensity_projections.ipynb

Example scripts

basic_image_processing.ijm
bigImageTransfer.ijm
drosophila_max_cylinder_projection.ijm
image_segmentation_3d.ijm
maximumProjection.ijm
orthogonalMaximumProjections.ijm
process_5D_stack.ijm
process_multichannel_timelapse.ijm
rotating_sphere.ijm
superpixel_segmentation.ijm
tribolium_morphometry.ijm
maximumProjection.js
maximumProjection.groovy
maximumProjection.bsh
interactiveCylinderProjection.py
interactiveSphereProjection.py
multi_GPU_demo.py

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