resample

Resamples an image with given size factors using an affine transform.

Availability: Available in Fiji by activating the update sites clij and clij2. This function is part of clij2_-2.5.0.1.jar.

resample often follows after

resample is often followed by

Usage in ImageJ macro

Ext.CLIJ2_resample(Image source, Image destination, Number factor_x, Number factor_y, Number factor_z, Boolean linear_interpolation);

Usage in object oriented programming languages

Java

// init CLIJ and GPU
import net.haesleinhuepf.clij2.CLIJ2;
import net.haesleinhuepf.clij.clearcl.ClearCLBuffer;
CLIJ2 clij2 = CLIJ2.getInstance();

// get input parameters
ClearCLBuffer source = clij2.push(sourceImagePlus);
destination = clij2.create(source);
float factor_x = 1.0;
float factor_y = 2.0;
float factor_z = 3.0;
boolean linear_interpolation = true;

// Execute operation on GPU
clij2.resample(source, destination, factor_x, factor_y, factor_z, linear_interpolation);

// show result
destinationImagePlus = clij2.pull(destination);
destinationImagePlus.show();

// cleanup memory on GPU
clij2.release(source);
clij2.release(destination);

Matlab

% init CLIJ and GPU
clij2 = init_clatlab();

% get input parameters
source = clij2.pushMat(source_matrix);
destination = clij2.create(source);
factor_x = 1.0;
factor_y = 2.0;
factor_z = 3.0;
linear_interpolation = true;

% Execute operation on GPU
clij2.resample(source, destination, factor_x, factor_y, factor_z, linear_interpolation);

% show result
destination = clij2.pullMat(destination)

% cleanup memory on GPU
clij2.release(source);
clij2.release(destination);

Icy JavaScript

// init CLIJ and GPU
importClass(net.haesleinhuepf.clicy.CLICY);
importClass(Packages.icy.main.Icy);

clij2 = CLICY.getInstance();

// get input parameters
source_sequence = getSequence();
source = clij2.pushSequence(source_sequence);
destination = clij2.create(source);
factor_x = 1.0;
factor_y = 2.0;
factor_z = 3.0;
linear_interpolation = true;

// Execute operation on GPU
clij2.resample(source, destination, factor_x, factor_y, factor_z, linear_interpolation);

// show result
destination_sequence = clij2.pullSequence(destination)
Icy.addSequence(destination_sequence);
// cleanup memory on GPU
clij2.release(source);
clij2.release(destination);

clEsperanto Python (experimental)

import pyclesperanto_prototype as cle

cle.resample(source, destination, factor_x, factor_y, factor_z, linear_interpolation)

Example notebooks

drosophila_max_cylinder_projection
Untitled.ipynb

Example scripts

drosophila_max_cylinder_projection.ijm
orthogonalMaximumProjections.ijm

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