resliceTop

Flippes Y and Z axis of an image stack. This operation is similar to ImageJs ‘Reslice [/]’ method but offers less flexibility such as interpolation.

Category: Transformations

Availability: Available in Fiji by activating the update sites clij and clij2. This function is part of clij2_-2.5.0.1.jar.

resliceTop often follows after

topHatBox (2)
resample (1)

resliceTop is often followed by

resliceRadial (3)

Usage in ImageJ macro

Ext.CLIJ2_resliceTop(Image source, Image destination);

Usage in object oriented programming languages

Java

// init CLIJ and GPU
import net.haesleinhuepf.clij2.CLIJ2;
import net.haesleinhuepf.clij.clearcl.ClearCLBuffer;
CLIJ2 clij2 = CLIJ2.getInstance();

// get input parameters
ClearCLBuffer source = clij2.push(sourceImagePlus);
destination = clij2.create(new long[]{source.getWidth(), source.getDepth(), source.getHeight()}, source.getNativeType());

// Execute operation on GPU
clij2.resliceTop(source, destination);

// show result
destinationImagePlus = clij2.pull(destination);
destinationImagePlus.show();

// cleanup memory on GPU
clij2.release(source);
clij2.release(destination);

Matlab

% init CLIJ and GPU
clij2 = init_clatlab();

% get input parameters
source = clij2.pushMat(source_matrix);
destination = clij2.create([source.getWidth(), source.getDepth(), source.getHeight()], source.getNativeType());

% Execute operation on GPU
clij2.resliceTop(source, destination);

% show result
destination = clij2.pullMat(destination)

% cleanup memory on GPU
clij2.release(source);
clij2.release(destination);

Icy JavaScript

// init CLIJ and GPU
importClass(net.haesleinhuepf.clicy.CLICY);
importClass(Packages.icy.main.Icy);

clij2 = CLICY.getInstance();

// get input parameters
source_sequence = getSequence();
source = clij2.pushSequence(source_sequence);
destination = clij2.create([source.getWidth(), source.getDepth(), source.getHeight()], source.getNativeType());

// Execute operation on GPU
clij2.resliceTop(source, destination);

// show result
destination_sequence = clij2.pullSequence(destination)
Icy.addSequence(destination_sequence);
// cleanup memory on GPU
clij2.release(source);
clij2.release(destination);

Example notebooks

drosophila_max_cylinder_projection

Example scripts

drosophila_max_cylinder_projection.ijm
interactiveCylinderProjection.py
interactiveSphereProjection.py
reslicing.py

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